Pair-wise Sequencing Alignment Math Problem Example | Topics and Well Written Essays - 1750 words

Pair-wise Sequencing Alignment - Math Problem Example Answer = 0.0 1.e. Are there any other results having the same E-value? If so, how many? Answer = Yes, 19others 1.f. What is the Max score for the top BLASTN search result? Answer = 4693 1.g. What is the Total score for the top BLASTN search result? Answer = 4693 1.h. What is the Query coverage for the top BLASTN search result? Answer = 100% 1.i What is the Max ident for the top BLASTN search result? Answer = 100% 1.j Are there any other results compared to the top BLASTN search result that have the same E-value, same Max score, same Query coverage, same Max ident, same Total score? If so, how many? Answer = Yes, 1 other 2. Using the sequence provided at the bottom of this document, Perform BLASTX using Database option set to "Reference proteins (refseq_protein)". Keep all other settings and parameters at the default value. 2.a. How many Blast Hits do you get for the sequence? Answer = 1 2.b. What is the sequence most similar to? Provide the Sequence Accession as your answer. Answer = XP_003433170.1 2.c. ... Answer = 58% 2.g. When you inspect the first alignment for the top BLASTX search result, what is the % Gap listed? Answer = 6% 2.h. When you inspect the first alignment for the top BLASTX search result, what is the Frame indicated? Answer = -1 Sequence to use: >